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Add filling in the changelog as a criteria in the contribution guidelines

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#797 In nf-core/raredisease;

· fellen31 opened on Mar 26, 2026

Add keep a changelog GitHub action

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#796 In nf-core/raredisease;

· fellen31 opened on Mar 26, 2026

User Story: Full tests for all subworkflows

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#795 In nf-core/raredisease;

· peterpru opened on Mar 25, 2026

Test gens in pipeline tests

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#786 In nf-core/raredisease;

· fellen31 opened on Mar 16, 2026

Remove haplocheck from the pipeline

Status: Open.

#761 In nf-core/raredisease;

· ramprasadn opened on Dec 17, 2025

Restrict variant calling and annotations to certain regions

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#740 In nf-core/raredisease;

· jemten opened on Nov 14, 2025

ERROR: genmod.commands.score_variants

bugSomething isn't workingSomething isn't working

Status: Open.

#736 In nf-core/raredisease;

· karlaarz opened on Oct 28, 2025

Running Multiple Singleton Samples with once CSV file

Status: Open.

#730 In nf-core/raredisease;

· bioinformaticsguy opened on Oct 4, 2025

Empty bed files not caught

bugSomething isn't workingSomething isn't working

Status: Open.

#729 In nf-core/raredisease;

· islean opened on Oct 1, 2025

Bug Report: SNV and SV annotations missing without errors

Status: Open.

#726 In nf-core/raredisease;

· bioinformaticsguy opened on Oct 1, 2025

haplogrep3 fails for some samples while other samples run without any error!

bugSomething isn't workingSomething isn't working

Status: Open.

#725 In nf-core/raredisease;

· bioinformaticsguy opened on Oct 1, 2025

CADD for chr? chromosome names

bugSomething isn't workingSomething isn't working

Status: Open.

#723 In nf-core/raredisease;

· fa2k opened on Sep 18, 2025